National Microbiology Laboratory Omics, Bioinformatics, and Computational Biologist Inventory

Important messages

The Public Health Agency of Canada's National Microbiology Laboratory (NML) is in a period of growth and requires top talent to support a variety of scientific program areas.

When you apply to this selection process, you are not applying for a specific job, but to an inventory process that is evergreen and used to fill current and future vacancies. Applicants included in the inventory may be pulled for review and could be referred for one or more opportunities based on screening criteria and needs of the position(s) to be staffed. As positions become available, applicants who meet the required qualifications may be contacted for further assessment.

The application process is streamlined. You only need to upload your resume and complete a few screening questions for common essential and asset criteria. The remaining education and experience criteria only requires a yes/no response at this time. Your responses will allow us to better narrow our search for specific positions across the NML. At the same time, it allows you to apply for a wide-range of positions simultaneously and therefore, it is important to answer the screening questions honestly to better your chances of successfully being matched with meaningful positions. The system allows you to refresh your responses on a continued basis as your circumstances change or progress. The breadth and depth of experience may be considered during screening, assessment and/or selection of candidates. You must provide examples and details of how you meet each experience requirement, including when, where, and how you obtained the experience.

Duties

The National Microbiology Laboratory is committed to providing exciting opportunities in an open and collaborative environment. You’ll be at the forefront of scientific computing for use in investigating the world’s most important infectious diseases.

We are seeking highly motivated individuals to lead the application and development of genomic and bioinformatics tools, algorithms, and analytical methods to support the Agency’s programs for public health research, surveillance, diagnostics and outbreak response. This important work will help to identify and track transmission trends and inform critical decision making relevant to health authorities across Canada.

The successful candidates will support science leads in collaboratively designing, developing and conducting computational data analytics for large data sets in the “omics” fields (genomics, transcriptomics, proteomics), provide expert advice, drive technology adoption in science programs, and manage projects and/or supervise multi-disciplinary teams.

To see examples of some of our software please visit: https://github.com/phac-nml

IMMEDIATE NEEDS:

🧪Senior Bioinformatician/Senior Computational Biologist 🧪
• The NML Bioinformatics Lab develops and applies cutting-edge bioinformatics pipelines and platforms for the large-scale
analysis of omics data in a high-performance computing environment.
• The Bioinformatics Lab works with key stakeholders at the NML and in public health labs across Canada to perform
genomic epidemiology of circulating infectious diseases in Canada and worldwide.
• The successful candidate(s) will join a strong team of bioinformaticians and computational biologists that work on the
forefront of pathogen genomic research, surveillance, and outbreak response.

OTHER NEEDS:

🧪Genomics Liaison Technical Officer (GLTO) - Computational Biologist 🧪
• The Canadian Public Health Laboratory Network (CPHLN) COVID Genomics Program (CCGP) was created to address public health needs within Canada’s COVID-19 response.
• CCGP builds and maintains capacity directly within provincial public health laboratories in support of National COVID surveillance and outbreak response and will support the use of genomics for other infectious diseases circulating in Canada.
• Priorities include strengthening technical operations of genomic-based surveillance, including interprovincial, national and international data sharing, increasing sequencing throughput, and reducing overall sequencing and data analysis turnaround time.
• The successful candidate(s) will be part of a multidisciplinary team involved in the development and implementation of innovative data analytics and bioinformatics to create diagnostic and interventional outcomes in the surveillance of infectious diseases.
• Continued genome-based identification is essential for ongoing surveillance and outbreak investigations, monitoring for variants with increased transmissibility and disease severity, including mutations that reduce testing and vaccine efficacy.

Work environment

The Public Health Agency of Canada's National Microbiology Laboratory (NML) provides scientific expertise and laboratory capacity for infectious disease monitoring, detection, investigation and outbreak response to support national and international public health action. Our laboratories lead the development and application of cutting edge tools to support innovation in infectious disease diagnostics, lab-based surveillance and applied and basic research on a range of pathogens with public health significance. NML strives to be the employer of choice for Canadian and international scientific and non-scientific staff. Our employees contribute leadership, ingenuity, expertise and innovation to safeguard the health of Canadians and the global community.

Intent of the process

This process is intended to create and maintain an inventory of candidates to fill a variety of positions across the National Microbiology Laboratory (NML). Applicants should be aware that a pool of qualified candidates (fully assessed or partially assessed) may be established and may be used to staff similar positions at this group and level for various tenures (indeterminate, acting appointments, assignment, deployment, specified period, secondment).

Applicants may be referred for one or more opportunities through call-outs sent directly through this inventory if they meet the needs of the position identified for staffing. Only those candidates referred will be contacted. Given that your application may be accessed at any point, we recommend submitting your application as soon as possible and responding to call-outs that match your experience and interest as they arise.

This inventory enables you to be matched to job opportunities such as: Bioinformatics/Computational Biologists, Biological Research Biologists, Laboratory Biologists, and Scientific Project Coordinators.

The first pull of candidate applications could be as early as January 20, 2023. It is therefore important for candidates to apply as soon as possible.

Positions to be filled: Number to be determined

Information you must provide

Your résumé.

In order to be considered, your application must clearly explain how you meet the following (essential qualifications)

ESSENTIAL EDUCATION:
Graduation with a degree from a recognized post-secondary institution with specialization in a biological science (ex. Microbiology, Virology, Parasitology, Biochemistry, Immunology, Genetics/Genomics, Molecular Biology, Bioinformatics, or Biology or other related discipline); or

For multidisciplinary positions classified as BI, the minimum standard is:
Graduation with a degree from a recognized post-secondary institution in a natural, physical or applied science with specialization in a field relevant to the duties of the position (ex. Computer Science, Bioinformatics, Computational Biology, Biomedical Engineering, Biotechnology).

Note:
The courses for the specialization must be acceptable and must have been taken at a recognized post-secondary institution, but not necessarily within a degree program in the required specialization.

Information regarding education requirements.

Degree equivalency

ESSENTIAL EXPERIENCE (Common to all positions):
• Recent and significant* experience working in the area of comparative “omics” (genomics, proteomics, transcriptomics, metagenomics, metatranscriptomics, etc.), bioinformatics, computational biology or population genetics.
• Recent and significant* experience with bioinformatics methods and databases, and using open-source bioinformatics software (installation and usage).
• Recent and significant* experience in the assembly, annotation, analysis and interpretation of complex “omics” datasets such as pathogen and/or host genomes.
• Recent experience in assessing “omics” data quality, downstream data processing, and developing or maintaining data quality standards.
• Recent experience in planning, organizing, and designing scientific or software projects.
• Recent experience in coordinating, and supervising or managing multidisciplinary teams or projects.

* Recent is defined as within the last five (5) years and significant refers to an acceptable combination of breadth, depth and complexity of tasks that is typically acquired over a period of two (2) years or more.

If you possess any of the following, your application must also clearly explain how you meet it (other qualifications)

IMPORTANT:
Depending on the position being staffed, any of the asset qualifications may also be deemed as an essential qualification and only candidates and persons who possess those qualifications will be considered for that specific vacancy. Please indicate if you posses any of the asset criteria in your application.

ASSET EDUCATION:
•Graduation with a MSc or PhD from a recognized post-secondary institution with a specialization in a field relevant to the duties of the position(s).

ASSET EXPERIENCE:
Specific asset experience being sought include:
•Experience using UNIX or LINUX-based operating systems and commands.
•Experience programming in one or more of the following languages: Perl, Python, R, Bash, C, C++, Java, HTML,
JavaScript, Structured Query Language (SQL), or other programming languages.
•Experience in developing algorithms and software tools for the analysis of pathogen and/or host genomes.
•Experience working in a professional software development environment.
•Experience working with bioinformatics tools to manipulate, clean, organize, evaluate and visualize data.
•Experience in designing and implementing relational database schemas and writing Structured Query Language (SQL) queries.
•Experience in developing internet-based client:server applications and programming interfaces for the analysis of “omic” information.
•Experience designing and developing public health informatics applications to collect, analyze and model public health data.
•Experience in analyzing and interpreting whole genome sequence data.
•Experience in performing and interpreting phylogenetic and phylogenomic analysis.
•Experience in in analyzing and interpreting molecular and genomic subtyping results.
•Experience in applying project management practices to data acquisition and analysis.

Note: Candidates may be required to meet additional qualifications, depending on the requirements of the specific position being staffed. These additional qualifications may be deemed as either an Essential or Asset qualification. Candidates must indicate on their online applications which Education and Experience qualifications they meet using yes or no answers. Only those candidates referred will be contacted. Further assessments will be conducted on additional criteria such as Knowledge, Experience, Abilities, and Competencies. Your résumé may be used as a secondary source of information.

The following will be applied / assessed at a later date (essential for the job)

Various language requirements
English essential
French essential
Bilingual imperative BBB/BBB, CBC/CBC, CCC/CCC

Information on language requirements

ESSENTIAL KNOWLEDGE (Common to all positions):
• Knowledge of theories, principles, and computational methods used in “omics” analytics (genomics, proteomics, transcriptomics), molecular epidemiology, or bioinformatics/computational biology (databases, computing languages, high performance computing technologies).
• Knowledge of “omics” data collection and data management practices including the assessment of data quality, data processing, and developing or maintaining data quality standards.

ESSENTIAL ABILITIES (Common to all positions):
• Ability to analyze and interpret complex** biological data or information.
• Ability to communicate effectively within a multi-disciplinary environment, and to audiences including non-expert stakeholders.
• Ability to work under pressure and to manage competing priorities with tight deadlines.

**Complex: analysis of a variety of data sources, being able to relate information into a data model or understand system technical specifications.

ESSENTIAL COMPETENCIES (Common to all positions):
• Demonstrating integrity and respect
• Thinking things through
• Working effectively with others
• Showing initiative and being action-oriented
• Leadership
• Communication

The following may be applied / assessed at a later date (may be needed for the job)

ASSET KNOWLEDGE
•Knowledge of the mission, mandate, and objectives of the Public Health Agency of Canada as they pertain to the federal role in health, emerging health issues and outbreak response.
•Knowledge of current principles, techniques and procedures used in molecular epidemiology and surveillance of pathogens of public health significance.

OPERATIONAL REQUIREMENTS:

Depending on the needs of the position one or more may be required:
• Must be available during core hours.
• Willingness and ability to occasionally work overtime.
• Willingness and ability to assist, mobilize, or deploy to fulfill operational requirements including outbreak and emergency laboratory responses.

Conditions of employment

Secret or Reliability security clearance (depending on the position)
Medical clearance (depending on the position)

Successful candidates must meet and maintain all terms and conditions of employment for the duration of their employment. The terms and conditions of employment and operational requirements may vary (other conditions or needs may be added or removed) according to the position being staffed.

Other information

The Public Service of Canada is committed to building a skilled and diverse workforce that reflects the Canadians we serve. We promote employment equity and encourage you to indicate if you belong to one of the designated groups when you apply.

Information on employment equity

The Public Health Agency of Canada is committed to Employment Equity. In order to ensure a diversified workforce, preference may be given to candidates self-identifying as belonging to one or more of the following Employment Equity groups: aboriginal peoples, persons with disabilities and members of visible minority groups provided the candidate meets all essential qualifications listed on the job opportunity notice and any applicable asset qualification(s).

// Information about Applying to Inventories //

■ The inventory will be updated every 120 days. You will receive periodic system-generated e-mails advising that your application will expire in a certain number of days, and asking you to log in to your GC Jobs account to resubmit your application. It is important that you monitor your e-mail and resubmit your application when prompted, or your application will be removed from the inventory. This ensures that the information that is provided to hiring managers is current and up-to-date, as well as ensuring that the candidates in the inventory are still interested in employment. You can click on the link in the e-mail to access your account, and you will have a message informing you that your application is set to expire. Click on “Update My Inventory Status” to resubmit your application.

// Are you ready to apply? //

■ To apply for any position, you need to first create a profile in the Public Service Resourcing System (PSRS), which should only take about 10 minutes. Then, after ensuring you meet the position requirements, scroll to the bottom of the poster and click on "Apply online."

■ Work your way through the list of requirements, completing each section and saving as you go. Before submitting your application, please ensure that there are green check marks on every single category before submitting your application.

■ If there are any red Xs on the categories, please click into that category and ensure that everything has been filled out. Screening questions have been built into the application process and occasionally an applicant may miss a field on the Screening Questions page. Please thoroughly review to ensure that you have responded to each question, including all the "Yes / No " questions.

■ PSRS will automatically disconnect candidates without warning after 60 minutes if there is no activity. You need to save or move to a new screen to maintain your connection. Typing information without saving does not prevent you from being disconnected. Applicants may find it helpful to first use a word processing software to complete their responses using concrete and detailed examples, then copy and paste the responses into PSRS afterwards.

■ If you have further questions on how to apply or experience technical difficulties with your application, please visit the following website: http://www.cfp-psc.gc.ca/contact-jobs/index-eng.php

■ We will only accept on-line applications received via the Public Service Jobs site. Persons with disabilities or residing in locations that prevent them from applying on-line are asked to contact 1-800-645-5605.

// Updating your Application //

■ You can choose to update your application when you resubmit it to the inventory, or anytime that something changes that will impact your application. For example, if you gain more experience in an area that is related to the qualifications outlined in the inventory, it would be beneficial to update your application to reflect this. Since hiring managers screen applications based on the information you provided in the screening questions, it is recommended that you include experience gained after you initially submitted your application to ensure they have all of the relevant information. This also applies to changes in your education level, locations or positions you are interested in, or any of the answers you provided to the screening questions.

To update your information you need to log into your GC Jobs account and retrieve your application. Your application will revert to In Progress, and allow you to make the necessary changes. You must resubmit your application to have it included in the inventory. If you do not wish to remain in the inventory you can delete your application at this stage.


// Screening //

■ Screening criteria is established to determine which candidates will qualify for further consideration and assessment. During the screening stage, the screening board will review your application to determine if you meet the essential education and essential experiences. However, some managers may opt to use asset education and asset experiences as well. This is why it is essential to provide concrete examples.

■ If you are a candidate that has been “screened-in,” this means that you may undergo further assessment to determine if you meet the other essential and/or asset criteria (i.e. knowledge, abilities, competencies, etc.).

// Assessment //

■ Managers can use a combination of assessment methods they deem relevant. Some common assessment methods are written exams, interviews, and reference checks. However, managers have the flexibility to use role-play, simulations, and performance / talent management considerations as part of their assessment.

■ When candidates are invited to the assessment stage, they will be notified of the qualifications being assessed and the assessment method (interview, written take home test, etc.). To help you prepare for assessment, you should think about examples that will best highlight how you meet the qualifications being assessed. During the assessment, use the “STAR” method to best explain your example. STAR stands for the following:

▪ Situation: Think of a situation in which you are/were involved.
▪ Task: Describe the tasks involved in the situation.
▪ Action: Specify what actions you took to achieve your results.
▪ Results: What results followed due to your actions? List them and describe each one briefly.

■ Each board will have specific criteria to assess and each pull from the inventory may be treated separately, therefore if you are referred for more than one opportunity you may be re-assessed on the same criteria.

■ Based on the hiring division’s needs, additional essential qualifications, asset qualifications, organizational needs, operational requirements and/or conditions of employment may be identified and applied during the assessment and/or selection of candidates.

■ In assessing candidates, assessment boards may use a variety of tools and methods including, but not limited to, reviews of past performance and accomplishments, written tests, interviews, simulations, PSC tests, reference checks, board member knowledge etc. In addition, all information obtained throughout the selection process, from the time of application to close of process, may be used to evaluate the candidates.

■ Candidates must meet the essential qualifications to be appointed to a position.

■ Depending on the number of applicants, needs and/or plans, volume management strategies such as, but not limited to, top-down approach, cut-off scores, asset selection, random selection and/or assessment may be used for the purpose of managing applications/candidates and/or determining which candidates will continue in the staffing process. Should a volume management strategy be used, communication regarding the application of the strategy will be provided to those candidates who are impacted.

■ Persons are entitled to participate in the appointment process in the official language of their choice. Applicants are asked to indicate their preferred official language in their application.

■ Appointment decisions may be based on one or more of the following criteria:
- Matching of the individual's experience or qualifications to the strengths and weaknesses of the work team.
- Matching of the individual's experience or qualifications to the specific duties of the position being staffed.
- Depth, breadth, type of work-specific experience.
- Level/degree of one or more competencies/qualifications.
- The organizational need of restructuring/budgetary constraints

■ Candidates from outside the federal public service may be required to pay for travel and relocation costs associated with this selection process.

■ Proof of education will be required. Candidates with foreign credentials must provide proof of Canadian equivalency. Consult the Canadian Information Centre for International Credentials for further information at http://www.cicic.ca.
__________________________________________________________________________________________________

// Important Notes //

▪ Acknowledgment of receipt of applications will not be sent.

▪ Candidates will be contacted by email and it is imperative that you provide a current email address that accepts e-mail from unknown users (some email systems block these types of email). It is also the candidate's responsibility to ensure accurate information is provided and updated as required.

▪ Candidates are strongly encouraged to check their email on a regular basis. It is your entire responsibility to inform us at all times of any changes regarding your contact information.

▪ All information obtained throughout the selection process, from the time of application to close of process, may be used to evaluate the candidates.

▪ Proof of citizenship will be requested if you are considered for a position.

Preference

Preference will be given to veterans first and then to Canadian citizens and permanent residents, with the exception of a job located in Nunavut, where Nunavut Inuit will be appointed first.

Information on the preference to veterans

We thank all those who apply. Only those selected for further consideration will be contacted.